Main Page

From Mmwiki

Jump to: navigation, search

Computational Biomolecular Engineering Lab (CBEL) Wiki

You need to log in to edit and read the pages. Email Dr. Ren to request an account.

Prof. Pengyu Ren

Biomedical Engineering Department

The University of Texas at Austin

Contents

Lab policy

Lab:lab_policy

Summer 2008 absence

Oscar 5/28 to 7/7 (Wedding and honeymoon) Jenny 5/28 to 7/7 John Fonner: 6/3 - 6/16

Lab Notebook Computers

Two notebook computers are available for presentations/group meetings. Contact Johnny or Pavel if you need to use it.

Lab weekly meeting

Lab meeting schedule 2008 Spring

  • Every Friday From 2:30pm-4:00pm

Individual Meeting Schedule

  • Tue 10-11:
  • Tue 11-12: Johnny Wu
  • Tue 2-3pm: Oscar
  • Thu 10-11: Jenny
  • Thu 11-12:
  • Thu 2-3pm: John Fonner

How to edit the Wiki

a white space in the beginning of sentence creates a box.
* a star gives a bullet (no white space in the beginning)
** double star indents
How to create a internal link: 
 [[Research:page_name|link_name]]> which gives link_name
 where Research is a spacename (predefined), page_name is whatever you like. 
 If the page doesn't exist, you will be able to create it.
How to create an external link:
 [http://www.somexyz.org Link_name], which gives a link to external website.
  or  [http://www.google.com], which gives [1]
  or give the address http://.... directly
To list avaliable pages in a namespace (like research):
  click on special pages, then all pages and choose "Research" from the pull down.
How to upload file
  lick on Upload file on the side bar, or alt-u
  you can link to the file after you uploaded it by specifying  [[ Image:File.pdf ]] in your page.
To change the sidebar: Mediawiki:Sidebar


Computer System administration

great tips for secure system

 http://www.puschitz.com/SecuringLinux.shtml#EnforcingStrongerPasswords

Yum update

yum update security

user setup

Ganglia: Monitor nodes activities

**/usr/sbin/cpufreq-selector -g performance The first CPU core will run at 100% afterwards. This command however only affect the first core. 
** Do the following to change the other cores: cat /sys/devices/system/cpu/cpu0/cpufreq/scaling_governor > /sys/devices/system/cpu/cpu1/cpufreq/scaling_governor

Other MISC

Mail

  • Mail server how to
  • Temperature sensor is enabled!
    • gkrellm and configure to show temperature and cpu load
    • To install lmsensor on sun:
yum install ksensors 
yum install lm_sensors 
coretemp for node19 -30 won;t be available until 2.26.22

run

/usr/sbin/sensors-detect 
sensors -s sensors -h
yum install gkrellm
  • Another command line tool to find out load of a myltiprocessor node is
    • mpstat -P ALL (rpm -ivh /opt/software/rehl4-rpms/sysstat*rpm)
  • to enable nfs
    • start /etc/init/nsf and portmap
    • copy: exports,hosts,hosts.allow,hosts.deny
    • /etc/sysconfig/iptables (restart iptables)
  • to remotely boot nodes see /usr/local/binwake_node
    • /sbin/ether-wake 00:13:D4:B9:44:40


  • Sun backup
    • The entire /home directory is backed up daily to biomol:/backup/home.daily/bk.day.0
    • The backup is incremental, i.e., it only records changes compared to bk.day.1, which is incremental to bk.day.2, etc. The backup goes back 7 days (bk.day.6)


  • SELinux command
    • setsebool -P use_nfs_home_dirs 1

Wiki Help

Consult the User's Guide for information on using the wiki software.

MediaWiki:Sidebar for editing the side bar (root)

quick format tips

From Wikipedia]], the free encyclopedia.

Table Title
header header 1 header 2 header 3
row 1 header row 1 cell 1 row 1 cell 2 row 1 cell 3
row 2 header row 2 cell 1 row 2 cell 2 row 2 cell 3
Personal tools
Publications